Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6696

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15063 and 15064 are separated by 319 nucleotides15064 and 15065 are separated by 540 nucleotides mRNA_6695: 15063 - K01045 PON arylesterase / paraoxonase, at 1,465,595 to 1,467,254 15063 mRNA_6696: 15064 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,467,574 to 1,471,494 15064 mRNA_6697: 15065 - K07188 LIPE, HSL hormone-sensitive lipase, at 1,472,035 to 1,475,787 15065

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,466,852 - 15063 mRNA_6695 0.76 +1.0
1,466,878 + 15063 mRNA_6695 0.77 -0.9
1,466,891 + 15063 mRNA_6695 0.78 +0.2
1,466,996 - 15063 mRNA_6695 0.84 -0.5
1,466,998 - 15063 mRNA_6695 0.85 +0.6
1,467,019 + 15063 mRNA_6695 0.86 -0.1
1,467,155 + -0.1
1,467,158 - -0.2
1,467,178 + -0.2
1,467,298 + -0.1
1,467,325 - -0.5
1,467,333 - -0.4
1,467,336 - -0.3
1,467,352 + -0.0
1,467,355 + +0.0
1,467,497 + +0.1
1,467,605 + +1.4
1,467,772 + -0.2
1,467,810 + -0.3
1,467,927 + -0.4
1,468,243 + 15064 mRNA_6696 0.17 -0.7
1,468,251 + 15064 mRNA_6696 0.17 -0.9
1,468,368 + 15064 mRNA_6696 0.20 +1.5
1,468,369 - 15064 mRNA_6696 0.20 -0.1
1,468,394 + 15064 mRNA_6696 0.21 -2.1
1,468,616 + 15064 mRNA_6696 0.27 -1.9
1,468,669 - 15064 mRNA_6696 0.28 +1.4
1,468,814 + 15064 mRNA_6696 0.32 +1.7
1,468,948 - 15064 mRNA_6696 0.35 +0.5
1,468,968 - 15064 mRNA_6696 0.36 +0.1
1,469,101 - 15064 mRNA_6696 0.39 -1.6
1,469,296 - 15064 mRNA_6696 0.44 -0.1
1,469,374 - 15064 mRNA_6696 0.46 +1.4
1,469,401 - 15064 mRNA_6696 0.47 -0.2
1,469,682 + 15064 mRNA_6696 0.54 -0.1
1,469,850 - 15064 mRNA_6696 0.58 -1.1
1,469,852 + 15064 mRNA_6696 0.58 +0.0
1,469,876 - 15064 mRNA_6696 0.59 -0.5
1,470,014 - 15064 mRNA_6696 0.62 +0.4
1,470,266 + 15064 mRNA_6696 0.69 -2.1
1,470,475 - 15064 mRNA_6696 0.74 +0.1
1,470,699 + 15064 mRNA_6696 0.80 -0.5
1,470,837 - 15064 mRNA_6696 0.83 -0.2
1,470,847 + 15064 mRNA_6696 0.83 -0.4
1,470,851 - 15064 mRNA_6696 0.84 -0.7
1,470,953 + 15064 mRNA_6696 0.86 +0.1
1,470,995 - 15064 mRNA_6696 0.87 +0.9
1,471,106 + +1.1
1,471,122 - +0.5
1,471,233 + +0.1
1,471,282 - +0.2
1,471,296 + +1.0
1,471,426 + +1.2
1,471,435 - +0.5
1,471,563 + -0.3
1,471,565 - -0.7
1,471,624 - +0.0
1,471,713 - -1.4
1,471,722 - -0.7
1,471,727 + +0.6
1,471,727 - +1.0
1,471,728 - +0.0
1,471,739 + +0.1
1,471,742 - +1.7
1,471,744 - +0.5
1,471,752 - -1.1
1,471,892 - +0.2
1,471,911 - +0.0
1,471,920 + +0.7

Or see this region's nucleotide sequence