Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6757

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15124 and 15125 are separated by 420 nucleotides15125 and 15126 are separated by 803 nucleotides mRNA_6756: 15124 - K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3, at 67,016 to 68,273 15124 mRNA_6757: 15125 - K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7, at 68,694 to 73,091 15125 mRNA_6758: 15126 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 73,895 to 75,434 15126

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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68,334 + -0.1
68,431 - +0.3
68,439 + +0.0
68,462 - -1.1
68,464 + +0.9
68,474 - -0.8
68,479 + -0.5
68,480 - -0.2
68,480 - -0.9
68,483 + +0.6
68,486 + -0.8
68,489 + -1.0
68,493 + +1.1
68,499 + +0.2
68,636 + +1.0
69,086 - -2.7
72,552 + 15125 mRNA_6757 0.88 +0.3
73,181 - +1.3
73,299 + +0.0
73,409 - -1.4
73,410 - +0.4
73,415 + -0.1
73,422 + +0.5
73,422 + -0.5
73,466 + -0.0
73,544 + +0.3
73,554 - -1.8
73,555 + -0.6
73,567 - -0.2

Or see this region's nucleotide sequence