Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6783

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15150 and 15151 are separated by 240 nucleotides15151 and 15152 are separated by 220 nucleotides mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019 15150 mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121,260 to 121,958 15151 mRNA_6784: 15152 - Hypothetical Protein, at 122,179 to 122,986 15152

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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121,152 - -0.1
121,162 - -0.0
121,198 + +0.4
121,203 - +0.6
121,204 + -0.2
121,206 + -0.2
121,216 - +0.2
121,221 + -0.5
121,337 - 15151 mRNA_6783 0.11 -0.1
121,505 - 15151 mRNA_6783 0.35 +0.7
121,526 - 15151 mRNA_6783 0.38 +0.7
121,532 + 15151 mRNA_6783 0.39 -0.4
121,533 + 15151 mRNA_6783 0.39 -0.3
121,546 - 15151 mRNA_6783 0.41 +0.0
121,556 + 15151 mRNA_6783 0.42 +0.6
121,819 - 15151 mRNA_6783 0.80 -0.1
121,924 + +0.5
121,962 + +0.6
122,141 - -0.5
122,180 + +0.9
122,202 + -1.3
122,682 + 15152 mRNA_6784 0.62 -0.1
122,831 - 15152 mRNA_6784 0.81 -1.6

Or see this region's nucleotide sequence