Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6785

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15152 and 15153 are separated by 286 nucleotides15153 and 15154 are separated by 349 nucleotides mRNA_6784: 15152 - Hypothetical Protein, at 122,179 to 122,986 15152 mRNA_6785: 15153 - K03860 PIGQ, GPI1 phosphatidylinositol glycan, class Q, at 123,273 to 125,638 15153 mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125,988 to 127,224 15154

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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122,682 + 15152 mRNA_6784 0.62 -0.1
122,831 - 15152 mRNA_6784 0.81 -1.6
122,985 + +0.7
123,086 - +0.4
123,114 - +0.0
123,128 - -0.2
123,911 + 15153 mRNA_6785 0.27 -0.0
123,973 - 15153 mRNA_6785 0.30 +2.2
124,162 + 15153 mRNA_6785 0.38 -0.1
124,471 - 15153 mRNA_6785 0.51 +0.2
124,498 + 15153 mRNA_6785 0.52 -2.0
124,572 - 15153 mRNA_6785 0.55 -0.0
124,760 + 15153 mRNA_6785 0.63 -0.5
125,152 - 15153 mRNA_6785 0.79 +0.5
125,159 + 15153 mRNA_6785 0.80 -1.7
125,339 + 15153 mRNA_6785 0.87 -0.5
125,447 + +1.4
125,736 + -0.6
125,764 - +0.1
125,790 - +3.5
125,793 - +0.9
125,918 - +2.1
125,920 - -0.4
125,933 - +0.3
125,956 + -0.4
126,080 - -0.3
126,083 - -1.1
126,084 + -0.4
126,108 + +0.4
126,111 + +0.3
126,527 - 15154 mRNA_6786 0.44 -1.2

Or see this region's nucleotide sequence