Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6795

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15162 and 15163 are separated by 104 nucleotides15163 and 15164 are separated by 780 nucleotides mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148,472 to 150,085 15162 mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150,190 to 154,769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155,550 to 156,068 15164

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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149,257 - 15162 mRNA_6794 0.49 -0.4
149,551 - 15162 mRNA_6794 0.67 -1.3
149,796 - 15162 mRNA_6794 0.82 +0.1
149,852 + 15162 mRNA_6794 0.86 -1.5
150,009 - -0.6
150,133 + -1.3
150,138 + -0.9
150,151 - +0.3
150,282 - +0.6
150,296 + +0.3
150,417 + -0.8
150,469 - -1.5
150,608 + +0.1
150,864 - 15163 mRNA_6795 0.15 +0.2
150,895 - 15163 mRNA_6795 0.15 -0.3
151,027 - 15163 mRNA_6795 0.18 -0.4
151,051 - 15163 mRNA_6795 0.19 +1.6
151,357 + 15163 mRNA_6795 0.25 -0.6
151,492 + 15163 mRNA_6795 0.28 +0.6
152,216 - 15163 mRNA_6795 0.44 +0.9
152,346 - 15163 mRNA_6795 0.47 -0.8
152,355 + 15163 mRNA_6795 0.47 -0.3
152,456 + 15163 mRNA_6795 0.49 -0.6
152,660 - 15163 mRNA_6795 0.54 +0.5
153,245 - 15163 mRNA_6795 0.67 +0.5
153,281 + 15163 mRNA_6795 0.67 -0.2
153,396 + 15163 mRNA_6795 0.70 +0.5
153,694 - 15163 mRNA_6795 0.77 +0.1
153,842 - 15163 mRNA_6795 0.80 -0.8
154,010 - 15163 mRNA_6795 0.83 +0.2
154,156 + 15163 mRNA_6795 0.87 +1.0
154,270 - 15163 mRNA_6795 0.89 -1.3
154,288 - 15163 mRNA_6795 0.89 +1.6
154,320 + -0.4
154,586 + -0.5
154,713 - -0.3
154,732 + +0.6
154,914 + -0.1
155,147 + +0.8
155,166 + -0.7
155,186 + +0.9
155,298 + +1.6
155,324 - -1.2
155,337 + -2.0
155,446 + +0.5
155,462 - -0.1
155,481 + +0.2
155,498 + +1.2
155,626 - 15164 mRNA_6796 0.15 -0.9
155,632 - 15164 mRNA_6796 0.16 -0.3
155,646 - 15164 mRNA_6796 0.18 +2.0
155,651 + 15164 mRNA_6796 0.19 +1.1
155,708 - 15164 mRNA_6796 0.30 +1.5
155,754 - 15164 mRNA_6796 0.39 +0.1

Or see this region's nucleotide sequence