Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6799

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15167 and 15168 are separated by 168 nucleotides mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163,328 to 165,722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165,891 to 167,581 15168

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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162,373 + -3.2
162,379 - -1.3
162,390 + +0.3
162,834 - +1.6
162,982 - +0.1
163,131 + -0.5
164,246 - 15167 mRNA_6799 0.38 -0.1
165,778 + +1.3
165,791 - -0.3
165,791 - -0.8
165,812 - +0.2
165,824 - -3.0
165,825 - -0.8
165,825 - -0.2
165,828 + +0.5
165,910 - +0.1
166,306 + 15168 mRNA_6800 0.25 +1.1
166,574 - 15168 mRNA_6800 0.40 +0.3
166,583 + 15168 mRNA_6800 0.41 -0.4

Or see this region's nucleotide sequence