Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6804

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15171 and 15172 are separated by 173 nucleotides15172 and 15173 are separated by 118 nucleotides mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172,404 to 173,557 15171 mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873 15172 mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183 15173

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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172,859 + 15171 mRNA_6803 0.39 +1.1
172,870 - 15171 mRNA_6803 0.40 -0.6
173,001 + 15171 mRNA_6803 0.52 -0.8
173,129 + 15171 mRNA_6803 0.63 -0.7
173,163 + 15171 mRNA_6803 0.66 +0.3
173,273 - 15171 mRNA_6803 0.75 +0.4
173,436 + 15171 mRNA_6803 0.89 +0.4
173,439 - 15171 mRNA_6803 0.90 +1.6
173,604 - -0.2
173,712 - -0.3
173,750 + -0.3
173,769 - -0.6
173,769 + +0.8
173,769 - +0.7
173,770 + -1.4
173,770 - -0.4
173,771 - +0.3
173,778 + -0.3
173,784 + -2.3
173,784 - -0.9
173,791 + -0.1
173,793 + -1.4
173,905 - 15172 mRNA_6804 0.15 -1.0
173,915 - 15172 mRNA_6804 0.16 +1.6
173,916 - 15172 mRNA_6804 0.16 +0.0
173,928 + 15172 mRNA_6804 0.17 +0.0
173,953 + 15172 mRNA_6804 0.19 -2.0
173,974 + 15172 mRNA_6804 0.21 +0.0
174,101 + 15172 mRNA_6804 0.32 -0.5
174,342 - 15172 mRNA_6804 0.53 -0.1
174,637 + 15172 mRNA_6804 0.79 -0.7
174,640 - 15172 mRNA_6804 0.80 +0.7
174,658 + 15172 mRNA_6804 0.81 +1.0
174,749 + 15172 mRNA_6804 0.89 +1.7
174,755 + 15172 mRNA_6804 0.90 -1.8
175,006 + +0.1
175,139 + 15173 mRNA_6805 0.12 -0.2
175,378 + 15173 mRNA_6805 0.32 +0.9
175,381 - 15173 mRNA_6805 0.33 +0.7
175,460 + 15173 mRNA_6805 0.39 -1.2
175,841 + 15173 mRNA_6805 0.71 +0.0

Or see this region's nucleotide sequence