Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6825

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15192 and 15193 are separated by 212 nucleotides15193 and 15194 are separated by 111 nucleotides mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213,876 to 215,865 15192 mRNA_6825: 15193 - K08876 SCYL1 SCY1-like protein 1, at 216,078 to 219,615 15193 mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219,727 to 220,528 15194

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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215,985 + +0.3
215,994 + +0.2
215,998 + -1.0
216,095 + +1.0
216,096 - +1.1
216,128 + +0.7
216,415 + +2.2
216,693 + 15193 mRNA_6825 0.17 -2.5
216,713 - 15193 mRNA_6825 0.18 -0.9
216,733 + 15193 mRNA_6825 0.19 +3.0
217,168 + 15193 mRNA_6825 0.31 -0.3
217,322 - 15193 mRNA_6825 0.35 +0.9
217,772 + 15193 mRNA_6825 0.48 +0.7
218,251 + 15193 mRNA_6825 0.61 -0.2
218,316 - 15193 mRNA_6825 0.63 +2.2
218,354 + 15193 mRNA_6825 0.64 +0.0
218,961 + 15193 mRNA_6825 0.81 +0.2
219,080 + 15193 mRNA_6825 0.85 -0.9
219,283 + +0.1
219,461 - -0.9
219,509 + -0.0
219,825 + 15194 mRNA_6826 0.12 -0.1
220,278 - 15194 mRNA_6826 0.69 -0.8
220,285 + 15194 mRNA_6826 0.70 -0.2
220,292 - 15194 mRNA_6826 0.70 +0.9
220,426 + 15194 mRNA_6826 0.87 +0.2
220,579 + +0.0
220,605 - +0.9

Or see this region's nucleotide sequence