Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15204 and 15205 are separated by 496 nucleotides mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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236,811 - +0.8
236,813 + -1.0
236,817 - +0.6
236,818 + -1.0
236,823 - -0.1
236,824 - -0.7
236,825 - +0.8
236,829 - +0.2
236,831 + +0.7
236,836 - +0.8
236,836 - -0.7
236,836 - -0.0
236,840 + +0.3
236,840 + +0.1
236,858 - -0.0
236,991 + +0.7
237,010 + +1.4
237,025 - +1.5
237,027 - -1.0
237,055 - +0.5
237,064 - -0.2
237,109 + +0.0
237,145 - +0.2
237,145 - +0.4
237,154 + -0.2
237,159 + -2.3
237,262 + +0.7
237,266 + -0.3
237,274 + +0.1
237,274 + -0.5
237,278 + -0.3
237,292 + +0.7
237,299 - +0.4
237,325 - +1.0
237,333 - -1.1
237,361 + -0.8
237,366 + -0.3
237,377 + +1.0
237,378 + -0.0
237,378 + +0.8
237,384 + -0.3
237,415 - +0.3
237,428 + +1.1
237,475 + +0.1
237,519 - +0.4
237,519 - -0.4
237,521 - +0.9
237,526 + -1.8
237,531 + +0.0
237,533 - +0.6
237,533 - -0.7
237,541 + +1.3
237,541 + +0.7
237,541 + -0.7
237,541 + -0.4
237,545 - -0.3
237,557 - +0.0
237,563 + +0.8
237,571 - -0.2
237,571 - -0.2
237,817 - -0.1
237,868 + -0.4
238,080 + 15204 mRNA_6836 0.26 +0.1
238,426 - 15204 mRNA_6836 0.57 -0.4
238,477 + 15204 mRNA_6836 0.62 -0.0
238,528 - 15204 mRNA_6836 0.66 -1.4
238,821 - +0.4
238,848 - -0.7
238,855 + -0.2
238,857 + +0.3
238,859 + +0.3
238,866 + +0.1
238,993 - +1.9
239,016 - +0.8
239,025 - -0.4
239,027 + -0.3
239,040 - +0.2
239,057 - -0.2
239,058 + -1.3
239,060 + +1.0
239,073 + +0.8
239,158 + +0.3
239,159 - -1.1
239,185 - -0.2
239,201 + +0.3
239,218 - -0.0
239,275 - -0.0
239,293 - +0.8
239,323 + -1.1
239,470 - -0.9
239,622 - 15205 mRNA_6837 0.16 -0.8
239,624 - 15205 mRNA_6837 0.16 +1.2
239,630 + 15205 mRNA_6837 0.17 +0.0
239,770 + 15205 mRNA_6837 0.27 -0.7

Or see this region's nucleotide sequence