Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6848

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15215 and 15216 are separated by 807 nucleotides mRNA_6847: 15215 - Hypothetical Protein, at 265,301 to 266,497 15215 mRNA_6848: 15216 - KOG1514 Origin recognition complex, subunit 1, and related proteins, at 267,305 to 268,256 15216

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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266,486 - -0.6
266,819 - +0.9
266,899 + -0.9
266,978 + +0.3
267,211 + -0.5
267,224 + +0.0
267,926 + 15216 mRNA_6848 0.65 +0.3
267,946 + 15216 mRNA_6848 0.67 -0.7
268,059 - 15216 mRNA_6848 0.79 -0.1
268,090 + 15216 mRNA_6848 0.82 +0.7
268,101 - 15216 mRNA_6848 0.84 +0.1
268,257 - +0.4
268,263 - -0.4
268,544 + -1.1
268,571 + +0.3
268,674 - -0.1
268,674 - +0.8
268,704 - -0.6
268,816 + -1.2
268,942 - -0.7
269,079 - -0.1

Or see this region's nucleotide sequence