Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6865

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15232 and 15233 are separated by 91 nucleotides15233 and 15234 are separated by 296 nucleotides mRNA_6864: 15232 - K18416 THEX1, ERI1 3'-5' exoribonuclease 1, at 305,954 to 308,144 15232 mRNA_6865: 15233 - HMMPfam-Spc24 subunit of Ndc80-PF08286,SUPERFAMILY--SSF143026, at 308,236 to 309,069 15233 mRNA_6866: 15234 - Hypothetical Protein, at 309,366 to 310,327 15234

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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307,408 - 15232 mRNA_6864 0.66 -0.4
307,416 - 15232 mRNA_6864 0.67 -0.9
307,536 - 15232 mRNA_6864 0.72 +0.1
307,575 - 15232 mRNA_6864 0.74 -0.1
307,701 + 15232 mRNA_6864 0.80 +0.3
307,702 + 15232 mRNA_6864 0.80 -0.0
307,975 - -1.0
307,993 - +0.1
307,998 - -0.3
308,002 + +0.4
308,003 + -0.8
309,141 - -0.5
309,277 - -0.2
309,278 - +0.8
309,308 + -0.4
309,394 - -0.7
309,427 - -0.2
309,434 - +0.4
309,459 - +0.7
309,541 - 15234 mRNA_6866 0.18 -1.7
309,727 + 15234 mRNA_6866 0.38 +0.2
309,733 + 15234 mRNA_6866 0.38 +0.2
309,762 + 15234 mRNA_6866 0.41 -0.1
309,770 - 15234 mRNA_6866 0.42 +0.1
309,868 + 15234 mRNA_6866 0.52 -0.7
309,916 + 15234 mRNA_6866 0.57 +0.5
309,916 - 15234 mRNA_6866 0.57 -0.0
310,030 + 15234 mRNA_6866 0.69 -0.3

Or see this region's nucleotide sequence