Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6910

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15277 and 15278 are separated by 337 nucleotides15278 and 15279 are separated by 660 nucleotides mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408,529 to 411,391 15277 mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411,729 to 414,888 15278 mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203 15279

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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410,890 - 15277 mRNA_6909 0.82 -0.8
411,446 - -0.8
411,468 - +0.1
411,469 + +0.1
411,481 + -0.9
411,594 - +0.6
414,847 + -2.2
414,865 - +0.9
414,970 - -0.9
414,987 + +1.0
415,114 - -1.6
415,123 - +0.1
415,141 + +0.3
415,271 + +0.2
415,309 + -1.6
415,428 - +0.1
415,440 - -1.1
415,453 + -0.3
415,465 - -0.8
415,467 - -0.1
415,470 + +0.1
415,484 + +0.0
415,487 + +0.2
415,590 + +0.2
415,595 + +1.6
415,603 + -0.1
415,605 - -0.5
415,614 - -0.1
415,736 + 15279 mRNA_6911 0.11 -0.3
415,742 - 15279 mRNA_6911 0.12 -0.5
415,746 - 15279 mRNA_6911 0.12 -0.5
415,746 - 15279 mRNA_6911 0.12 +0.7
415,771 - 15279 mRNA_6911 0.13 +0.0
415,772 + 15279 mRNA_6911 0.13 -0.6
415,786 + 15279 mRNA_6911 0.14 -0.2
415,787 + 15279 mRNA_6911 0.14 +0.4
415,789 + 15279 mRNA_6911 0.15 +0.1
415,792 - 15279 mRNA_6911 0.15 +0.8

Or see this region's nucleotide sequence