Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6993

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15360 and 15361 are separated by 80 nucleotides15361 and 15362 are separated by 126 nucleotides mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573 15360 mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622,654 to 624,401 15361 mRNA_6994: 15362 - K10134 EI24 etoposide-induced 2.4 mRNA, at 624,528 to 626,391 15362

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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621,675 - 15360 mRNA_6992 0.58 -1.1
621,701 - 15360 mRNA_6992 0.59 -0.6
621,708 - 15360 mRNA_6992 0.60 -0.2
621,781 + 15360 mRNA_6992 0.63 -0.2
622,145 - 15360 mRNA_6992 0.80 +1.6
622,148 - 15360 mRNA_6992 0.80 +0.2
622,267 + 15360 mRNA_6992 0.86 -0.9
622,536 + -0.4
622,558 - -0.2
622,695 - -0.0
622,980 - 15361 mRNA_6993 0.19 -0.1
623,576 - 15361 mRNA_6993 0.53 -1.1
624,020 + 15361 mRNA_6993 0.78 -1.6
624,269 + -0.2
624,303 + -0.2
624,435 - +0.9
624,437 + -1.4
624,454 - -0.8
624,469 + -0.1
624,595 + -1.1
624,723 + 15362 mRNA_6994 0.10 -0.5
624,727 + 15362 mRNA_6994 0.11 +0.1
624,737 + 15362 mRNA_6994 0.11 -0.2
624,743 + 15362 mRNA_6994 0.12 +0.4
624,749 + 15362 mRNA_6994 0.12 -0.9
624,880 + 15362 mRNA_6994 0.19 -1.3
624,902 - 15362 mRNA_6994 0.20 +0.9
625,205 + 15362 mRNA_6994 0.36 +1.2

Or see this region's nucleotide sequence