Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6996

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15363 and 15364 are separated by 126 nucleotides15364 and 15365 are separated by 64 nucleotides mRNA_6995: 15363 - K15323 TSEN34 tRNA-splicing endonuclease subunit Sen34, at 626,622 to 627,882 15363 mRNA_6996: 15364 - Hypothetical Protein, at 628,009 to 630,189 15364 mRNA_6997: 15365 - K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase, at 630,254 to 632,002 15365

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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627,940 - +0.6
627,945 - +0.7
627,946 + +0.4
627,948 + +0.3
628,213 + -0.3
628,216 - +1.2
628,257 + 15364 mRNA_6996 0.11 +1.1
628,384 - 15364 mRNA_6996 0.17 -0.4
628,486 + 15364 mRNA_6996 0.22 -0.0
628,510 + 15364 mRNA_6996 0.23 -0.4
628,653 - 15364 mRNA_6996 0.30 -0.3
628,678 - 15364 mRNA_6996 0.31 +0.1
628,689 - 15364 mRNA_6996 0.31 +0.0
628,958 + 15364 mRNA_6996 0.44 +0.5
629,009 + 15364 mRNA_6996 0.46 +1.1
629,137 + 15364 mRNA_6996 0.52 -0.7
629,139 - 15364 mRNA_6996 0.52 +0.4
629,248 - 15364 mRNA_6996 0.57 -1.1
629,412 - 15364 mRNA_6996 0.64 +1.0
629,710 - 15364 mRNA_6996 0.78 +0.7
629,855 - 15364 mRNA_6996 0.85 +0.1
629,872 - 15364 mRNA_6996 0.85 +0.6
629,885 - 15364 mRNA_6996 0.86 +0.1
630,289 + -0.1
630,581 - 15365 mRNA_6997 0.19 -0.5
630,641 + 15365 mRNA_6997 0.22 +0.4
630,709 - 15365 mRNA_6997 0.26 +0.0
631,029 + 15365 mRNA_6997 0.44 -0.2

Or see this region's nucleotide sequence