Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7017

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15384 and 15385 are separated by 113 nucleotides15385 and 15386 are separated by 583 nucleotides mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680,551 to 683,526 15384 mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233 15385 mRNA_7018: 15386 - Hypothetical Protein, at 684,817 to 685,871 15386

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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682,648 + 15384 mRNA_7016 0.70 -0.6
682,948 + 15384 mRNA_7016 0.81 +0.1
682,978 - 15384 mRNA_7016 0.82 -0.2
683,002 + 15384 mRNA_7016 0.82 +0.5
683,114 + 15384 mRNA_7016 0.86 +1.1
683,202 + 15384 mRNA_7016 0.89 -0.6
683,241 - -2.9
683,245 + +0.2
683,412 + -0.4
683,549 + -0.5
683,985 - 15385 mRNA_7017 0.58 -0.4
683,996 - 15385 mRNA_7017 0.60 +2.0
684,100 + 15385 mRNA_7017 0.77 -1.4
684,141 - 15385 mRNA_7017 0.84 -0.3
684,293 + +0.8
684,589 - +1.3
684,598 + -0.0
684,598 + -0.5

Or see this region's nucleotide sequence