Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7018

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15385 and 15386 are separated by 583 nucleotides15386 and 15387 are separated by 216 nucleotides mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683,640 to 684,233 15385 mRNA_7018: 15386 - Hypothetical Protein, at 684,817 to 685,871 15386 mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686,088 to 688,034 15387

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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683,985 - 15385 mRNA_7017 0.58 -0.4
683,996 - 15385 mRNA_7017 0.60 +2.0
684,100 + 15385 mRNA_7017 0.77 -1.4
684,141 - 15385 mRNA_7017 0.84 -0.3
684,293 + +0.8
684,589 - +1.3
684,598 + -0.0
684,598 + -0.5
685,457 + 15386 mRNA_7018 0.61 +0.7
685,607 - 15386 mRNA_7018 0.75 -0.0
685,742 - 15386 mRNA_7018 0.88 +0.5
685,752 + 15386 mRNA_7018 0.89 +0.3
685,754 + 15386 mRNA_7018 0.89 +0.1
685,866 - -2.2
686,054 + +0.1
686,061 + -1.3

Or see this region's nucleotide sequence