Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7049

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15417 and 15418 are separated by 70 nucleotides mRNA_7049: 15417 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 758,628 to 760,981 15417 mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761,052 to 762,821 15418

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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758,415 - -1.0
758,439 - -2.0
758,588 - +0.1
758,596 + -0.7
758,610 - -0.5
758,767 - -0.9
759,343 - 15417 mRNA_7049 0.30 -0.7
759,635 + 15417 mRNA_7049 0.43 -0.3
759,678 - 15417 mRNA_7049 0.45 -0.1
759,919 - 15417 mRNA_7049 0.55 +0.0
759,960 + 15417 mRNA_7049 0.57 -0.2
760,288 + 15417 mRNA_7049 0.71 -0.3
760,346 + 15417 mRNA_7049 0.73 -0.0
760,476 + 15417 mRNA_7049 0.79 -0.9
760,498 - 15417 mRNA_7049 0.79 -0.5
760,615 - 15417 mRNA_7049 0.84 -0.5
760,766 + -0.8
760,777 - -0.0
760,803 - +0.1
761,075 - +0.0
761,688 + 15418 mRNA_7050 0.36 -0.4
761,841 + 15418 mRNA_7050 0.45 -0.1
761,924 + 15418 mRNA_7050 0.49 -0.2

Or see this region's nucleotide sequence