Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7085

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15452 and 15453 are separated by 164 nucleotides15453 and 15454 are separated by 146 nucleotides mRNA_7084: 15452 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 842,141 to 843,806 15452 mRNA_7085: 15453 - HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689, at 843,971 to 847,409 15453 mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847,556 to 851,531 15454

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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843,075 + 15452 mRNA_7084 0.56 -0.3
843,154 + 15452 mRNA_7084 0.61 -0.4
843,185 - 15452 mRNA_7084 0.63 -0.1
843,294 + 15452 mRNA_7084 0.69 +0.5
843,576 + 15452 mRNA_7084 0.86 -0.3
843,576 + 15452 mRNA_7084 0.86 +0.1
843,584 - 15452 mRNA_7084 0.87 -0.3
843,749 + +0.7
845,338 + 15453 mRNA_7085 0.40 -0.9
845,340 + 15453 mRNA_7085 0.40 +0.9
846,068 + 15453 mRNA_7085 0.61 +1.6
846,264 + 15453 mRNA_7085 0.67 -1.0
847,056 + 15453 mRNA_7085 0.90 -1.7
847,462 - -0.7
847,480 - +0.1
847,519 + +0.8
847,789 - -0.8
848,099 + 15454 mRNA_7086 0.14 -1.2

Or see this region's nucleotide sequence