Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7122

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15489 and 15490 are separated by 422 nucleotides15490 and 15491 are separated by 147 nucleotides mRNA_7121: 15489 - PRINTS-Proline rich extensin signature-PR01217,ProSiteProfiles-EH domain profile.-PS50031, at 928,418 to 929,954 15489 mRNA_7122: 15490 - K14791 PWP1 periodic tryptophan protein 1, at 930,377 to 932,524 15490 mRNA_7123: 15491 - K00683 QPCT glutaminyl-peptide cyclotransferase, at 932,672 to 934,092 15491

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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929,429 + 15489 mRNA_7121 0.66 +0.7
929,684 - 15489 mRNA_7121 0.82 +0.3
929,685 - 15489 mRNA_7121 0.82 -1.1
929,692 + 15489 mRNA_7121 0.83 -0.8
929,818 - +0.5
929,948 - -0.7
929,949 + -0.2
929,975 + +0.4
930,012 - +0.4
930,016 - +1.5
932,807 + +0.1
933,030 - 15491 mRNA_7123 0.25 +0.6
933,052 - 15491 mRNA_7123 0.27 -0.8
933,081 - 15491 mRNA_7123 0.29 +0.2
933,357 - 15491 mRNA_7123 0.48 +0.2
933,365 + 15491 mRNA_7123 0.49 -0.2

Or see this region's nucleotide sequence