Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7225

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15592 and 15593 are separated by 736 nucleotides15593 and 15594 are separated by 582 nucleotides mRNA_7224: 15592 - K15564 CTK2 CTD kinase subunit beta, at 1,171,595 to 1,173,622 15592 mRNA_7225: 15593 - Hypothetical Protein, at 1,174,359 to 1,174,926 15593 mRNA_7226: 15594 - HMMPfam-Demethylmenaquinone methyltransferase-PF03737,SUPERFAMILY--SSF89562, at 1,175,509 to 1,176,564 15594

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,173,950 + +0.3
1,174,294 + +0.7
1,174,730 + 15593 mRNA_7225 0.65 +0.1
1,174,854 - 15593 mRNA_7225 0.87 -0.4
1,174,863 + 15593 mRNA_7225 0.89 -0.4
1,175,186 - -0.5
1,175,756 + 15594 mRNA_7226 0.23 -1.0

Or see this region's nucleotide sequence