Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7232

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15599 and 15600 are separated by 947 nucleotides15600 and 15601 are separated by 107 nucleotides mRNA_7231: 15599 - Hypothetical Protein, at 1,183,430 to 1,185,124 15599 mRNA_7232: 15600 - K10572 IPPK inositol-pentakisphosphate 2-kinase, at 1,186,072 to 1,187,585 15600 mRNA_7233: 15601 - Hypothetical Protein, at 1,187,693 to 1,188,676 15601

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,185,079 + +1.0
1,185,350 - -0.4
1,185,382 + -1.7
1,185,519 + +0.1
1,185,535 + +0.7
1,185,661 - +0.7
1,185,682 - +0.2
1,185,720 + -0.0
1,185,830 - -1.0
1,185,849 + -0.8
1,185,975 + +0.9
1,185,978 - +0.3
1,187,574 + -0.7
1,187,583 - -1.8
1,187,714 + -0.0
1,187,726 - -1.2
1,187,993 - 15601 mRNA_7233 0.30 -1.5
1,188,424 - 15601 mRNA_7233 0.74 -0.9
1,188,432 + 15601 mRNA_7233 0.75 -0.4
1,188,581 - -0.7
1,188,585 - -0.4
1,188,585 - -0.6

Or see this region's nucleotide sequence