Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7246

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15613 and 15614 are separated by 72 nucleotides15614 and 15615 are separated by 146 nucleotides mRNA_7245: 15613 - K17972 NAA20, NAT3 N-terminal acetyltransferase B complex catalytic subunit, at 1,211,695 to 1,212,788 15613 mRNA_7246: 15614 - Hypothetical Protein, at 1,212,861 to 1,214,455 15614 mRNA_7247: 15615 - Hypothetical Protein, at 1,214,602 to 1,216,220 15615

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,212,729 + +0.1
1,212,752 - -2.2
1,213,135 - 15614 mRNA_7246 0.17 +2.3
1,213,309 - 15614 mRNA_7246 0.28 -0.1
1,213,661 - 15614 mRNA_7246 0.50 -0.1
1,213,768 - 15614 mRNA_7246 0.57 -0.7
1,213,770 + 15614 mRNA_7246 0.57 -0.4
1,213,878 - 15614 mRNA_7246 0.64 -0.2
1,213,900 + 15614 mRNA_7246 0.65 +0.3
1,213,963 + 15614 mRNA_7246 0.69 +1.5
1,214,160 - 15614 mRNA_7246 0.81 -0.9
1,214,208 - 15614 mRNA_7246 0.84 -0.3
1,214,208 - 15614 mRNA_7246 0.84 +0.5
1,214,328 - -0.2
1,214,334 + +0.3
1,214,376 + +1.8
1,214,504 + -1.1
1,214,596 - -0.2
1,214,899 - 15615 mRNA_7247 0.18 -0.2
1,215,069 + 15615 mRNA_7247 0.29 -0.4
1,215,190 - 15615 mRNA_7247 0.36 -1.5

Or see this region's nucleotide sequence