Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7312

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15679 and 15680 are separated by 390 nucleotides15680 and 15681 are separated by 395 nucleotides mRNA_7311: 15679 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,372,652 to 1,373,595 15679 mRNA_7312: 15680 - HMMPfam-Protein of unknown function (DUF3429)-PF11911, at 1,373,986 to 1,375,689 15680 mRNA_7313: 15681 - K00417 QCR7, UQCRB ubiquinol-cytochrome c reductase subunit 7, at 1,376,085 to 1,377,067 15681

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,373,578 + -0.6
1,373,751 - +1.2
1,373,891 + +0.5
1,373,899 + -1.4
1,373,900 + +0.1
1,374,122 - +0.7
1,374,234 - 15680 mRNA_7312 0.15 -0.5
1,374,374 - 15680 mRNA_7312 0.23 -0.1
1,374,489 + 15680 mRNA_7312 0.30 -0.6
1,374,511 + 15680 mRNA_7312 0.31 -0.0
1,374,832 - 15680 mRNA_7312 0.50 -0.3
1,374,941 + 15680 mRNA_7312 0.56 -0.4
1,374,942 + 15680 mRNA_7312 0.56 +0.4
1,375,663 - +0.1
1,375,822 + +2.0
1,376,100 + -0.6

Or see this region's nucleotide sequence