Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7335

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15702 and 15703 are separated by 221 nucleotides15703 and 15704 are separated by 4 nucleotides mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086 15702 mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781 15703 mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791 15704

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
30,341 - 15702 mRNA_7334 0.53 +0.4
30,512 - 15702 mRNA_7334 0.64 +0.7
30,819 + 15702 mRNA_7334 0.83 -0.8
30,820 - 15702 mRNA_7334 0.83 -0.3
30,846 + 15702 mRNA_7334 0.85 +0.3
30,902 - 15702 mRNA_7334 0.88 -0.3
30,920 - 15702 mRNA_7334 0.89 +0.9
30,947 - +1.5
31,065 - -0.5
31,237 + +0.6
31,239 + +0.2
31,259 + +0.2
31,263 + +1.1
31,271 + +0.5
31,285 - +0.3
31,291 - -0.4
31,293 - -0.7
31,299 - +0.2
31,301 - +0.9
31,303 - +0.8
31,315 - +0.1
31,326 - +0.4
31,330 - -0.8
31,340 + -0.7
31,341 - +0.1
31,342 - -1.0
31,372 - 15703 mRNA_7335 0.14 +0.3
31,383 + 15703 mRNA_7335 0.16 -1.5
31,385 - 15703 mRNA_7335 0.16 +0.1
31,389 - 15703 mRNA_7335 0.17 -0.9
31,397 + 15703 mRNA_7335 0.19 +0.0
31,410 + 15703 mRNA_7335 0.22 +1.1
31,434 + 15703 mRNA_7335 0.27 +0.9
31,458 + 15703 mRNA_7335 0.32 -0.1
31,532 - 15703 mRNA_7335 0.47 +0.1
32,270 - 15704 mRNA_7336 0.48 +0.5
32,426 - 15704 mRNA_7336 0.64 +1.0
32,589 + 15704 mRNA_7336 0.80 -1.0
32,700 + -0.1
32,708 - +0.9
32,748 - +0.2

Or see this region's nucleotide sequence