Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7338

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15705 and 15706 are separated by 439 nucleotides15706 and 15707 are separated by 378 nucleotides mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33,079 to 35,089 15705 mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35,529 to 37,856 15706 mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594 15707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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34,604 + 15705 mRNA_7337 0.76 -0.0
34,871 + 15705 mRNA_7337 0.89 -0.5
35,034 + -0.3
35,036 - -0.5
35,183 + -0.1
35,191 + +1.2
35,456 + +1.3
35,495 + -1.4
35,922 + 15706 mRNA_7338 0.17 -0.3
35,953 + 15706 mRNA_7338 0.18 +0.1
36,209 + 15706 mRNA_7338 0.29 +1.4
36,651 + 15706 mRNA_7338 0.48 -0.3
36,655 - 15706 mRNA_7338 0.48 +0.3
36,681 - 15706 mRNA_7338 0.49 -0.3
36,795 - 15706 mRNA_7338 0.54 +0.6
37,930 - -1.3
37,934 + -0.1
37,975 - +0.6
37,980 - -1.3
37,987 + -0.3
37,999 - +0.1
38,003 + -0.5
38,130 - +0.1
38,321 - +0.3
38,336 + -0.3
38,451 + 15707 mRNA_7339 0.16 -1.2
38,465 + 15707 mRNA_7339 0.17 +0.2
38,635 - 15707 mRNA_7339 0.29 -0.1

Or see this region's nucleotide sequence