Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7402

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15769 and 15770 are separated by 132 nucleotides15770 and 15771 are separated by 721 nucleotides mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201 15769 mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902 15770 mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387 15771

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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192,697 - 15769 mRNA_7401 0.84 +0.3
192,767 - 15769 mRNA_7401 0.86 -0.2
193,315 - +0.4
193,326 + +1.4
193,330 + +0.7
193,442 + +0.3
193,450 - -1.0
193,468 + +1.9
193,636 + 15770 mRNA_7402 0.12 +0.0
194,169 - 15770 mRNA_7402 0.33 -0.5
194,614 - 15770 mRNA_7402 0.50 -0.2
194,906 - 15770 mRNA_7402 0.61 -0.1
194,913 + 15770 mRNA_7402 0.61 +0.6
194,924 - 15770 mRNA_7402 0.62 -1.0
195,050 - 15770 mRNA_7402 0.67 -1.7
195,078 - 15770 mRNA_7402 0.68 -0.1
195,179 + 15770 mRNA_7402 0.72 +0.2
195,208 + 15770 mRNA_7402 0.73 -0.3
196,095 - +0.7
196,105 + -0.6

Or see this region's nucleotide sequence