Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7416

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15783 and 15784 are separated by 354 nucleotides15784 and 15785 are separated by 505 nucleotides mRNA_7415: 15783 - K00623 CHAT choline O-acetyltransferase, at 224,669 to 227,280 15783 mRNA_7416: 15784 - Hypothetical Protein, at 227,635 to 230,239 15784 mRNA_7417: 15785 - K03353 APC6, CDC16 anaphase-promoting complex subunit 6, at 230,745 to 233,451 15785

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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227,264 - +0.4
227,281 - -1.4
227,401 + -0.7
227,413 - -0.0
227,426 - -0.0
227,427 + -0.1
227,540 - -1.1
227,581 + -0.0
227,726 + +0.1
229,880 - 15784 mRNA_7416 0.86 -1.6
230,042 + +0.2
230,047 + -0.4
230,178 - -1.1
230,185 + +0.8
230,468 - -0.4
230,477 - -0.3
230,478 - +0.1
230,489 + +0.7
230,491 - +0.4
230,499 - +1.4
230,779 - +1.3
231,080 - 15785 mRNA_7417 0.12 +0.5

Or see this region's nucleotide sequence