Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7428

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15796 and 15797 are separated by 52 nucleotides mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251,137 to 252,658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477 15797

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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250,193 + -0.2
250,239 - +0.0
250,361 + -0.9
250,414 + +1.0
250,504 - -0.1
250,528 - -0.5
250,587 + +0.1
250,694 + -1.1
250,710 + -0.2
250,745 - +0.6
250,782 + -0.2
250,806 - -0.2
250,838 + -0.2
250,838 - +0.3
250,854 + -0.6
250,957 - -0.9
250,958 - +0.1
250,963 + -1.3
250,964 + +0.0
250,973 + +0.6
250,983 + +2.1
251,103 + -0.8
251,291 - 15796 mRNA_7428 0.10 -0.5
252,155 - 15796 mRNA_7428 0.67 -1.1
252,169 + 15796 mRNA_7428 0.68 -1.1
252,622 + -0.9
252,895 + -1.0
253,018 - 15797 mRNA_7429 0.11 +0.5
253,050 - 15797 mRNA_7429 0.12 -0.2
253,513 - 15797 mRNA_7429 0.29 -0.6

Or see this region's nucleotide sequence