Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7465

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15832 and 15833 are separated by 181 nucleotides15833 and 15834 are separated by 538 nucleotides mRNA_7464: 15832 - BLAST expressed protein [Schizophyllum commune H4-8], at 339,268 to 340,751 15832 mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340,933 to 344,642 15833 mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345,181 to 349,645 15834

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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340,802 - -0.4
340,816 - +0.4
340,832 - +0.3
340,838 - -0.4
340,839 + +0.4
340,848 + +0.1
340,850 + -0.1
340,850 + -0.9
340,859 + +0.3
340,980 - -0.5
340,988 + -0.6
340,994 + +0.4
341,006 + +0.1
341,266 - +0.3
341,285 - -0.3
341,299 + -1.4
341,433 - 15833 mRNA_7465 0.13 -1.0
341,473 - 15833 mRNA_7465 0.15 -1.1
341,581 + 15833 mRNA_7465 0.17 -0.1
341,749 + 15833 mRNA_7465 0.22 +0.7
342,938 + 15833 mRNA_7465 0.54 -0.9
343,001 + 15833 mRNA_7465 0.56 +0.2
343,163 + 15833 mRNA_7465 0.60 +0.9
343,332 - 15833 mRNA_7465 0.65 +0.2
343,786 - 15833 mRNA_7465 0.77 +0.6
343,809 - 15833 mRNA_7465 0.78 -0.5
343,817 + 15833 mRNA_7465 0.78 -0.2
343,958 + 15833 mRNA_7465 0.82 +1.3
344,070 - 15833 mRNA_7465 0.85 -2.8
345,168 + -0.5

Or see this region's nucleotide sequence