Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7484

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15852 and 15853 are separated by 911 nucleotides mRNA_7484: 15852 - K09565 PPIF peptidyl-prolyl isomerase F (cyclophilin D), at 392,851 to 393,989 15852 mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394,901 to 397,101 15853

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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391,865 - -1.2
392,052 + -0.4
392,080 - -0.8
392,182 - -0.7
392,193 - -0.6
392,209 - -0.2
392,356 + +0.4
392,604 + -0.3
392,639 - -0.1
392,781 + +0.5
392,912 + +0.5
393,246 - 15852 mRNA_7484 0.35 +1.7
393,660 - 15852 mRNA_7484 0.71 -0.5
393,660 - 15852 mRNA_7484 0.71 +0.1
393,690 - 15852 mRNA_7484 0.74 +0.3
393,812 + 15852 mRNA_7484 0.84 +0.2
393,815 + 15852 mRNA_7484 0.85 +1.4
393,828 + 15852 mRNA_7484 0.86 -0.9
393,833 + 15852 mRNA_7484 0.86 +1.3
393,966 - +1.2
393,982 + -0.1
393,983 - +0.2
393,984 + +0.3
393,988 + -0.1
394,000 + +0.9
394,114 - -0.8
394,116 - -0.4
394,134 + -0.9
394,139 + +0.2
394,154 + +0.1
394,262 - +0.4
394,264 - -0.5
394,283 - +0.3
394,285 - +0.1
394,299 - +0.4
394,302 - +0.1
394,306 + -0.0
394,310 + +0.1
394,313 + +0.2
394,324 + +0.1
394,435 + +0.6
394,473 + +1.7
394,598 + +0.4
394,602 + +0.1
394,620 + -0.2
394,891 + -0.9
394,898 + +0.3

Or see this region's nucleotide sequence