Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7531

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15898 and 15899 are separated by 346 nucleotides15899 and 15900 are separated by 128 nucleotides mRNA_7530: 15898 - Hypothetical Protein, at 502,858 to 503,836 15898 mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474 15899 mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505,603 to 507,822 15900

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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503,283 + 15898 mRNA_7530 0.43 +0.3
503,296 - 15898 mRNA_7530 0.45 +0.3
503,443 + 15898 mRNA_7530 0.60 -0.1
503,587 + 15898 mRNA_7530 0.74 +0.0
503,609 + 15898 mRNA_7530 0.77 -1.8
503,729 - 15898 mRNA_7530 0.89 +0.0
503,732 - 15898 mRNA_7530 0.89 -0.2
503,734 - 15898 mRNA_7530 0.89 +0.5
503,739 - -3.1
503,776 + -0.3
505,234 + 15899 mRNA_7531 0.81 -0.2
505,475 + -1.1
505,476 - +0.6
505,476 - +0.9
505,491 + +0.6
505,493 - -2.7
505,494 - +0.1
505,499 + +0.5
505,510 - -0.1
505,515 - -0.8
505,519 + +0.0
505,521 - -0.1
505,529 - +1.9
505,582 + +0.3
506,048 - 15900 mRNA_7532 0.20 +0.9
506,369 - 15900 mRNA_7532 0.35 +0.1

Or see this region's nucleotide sequence