Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7550

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15917 and 15918 are separated by 151 nucleotides15918 and 15919 are separated by 529 nucleotides mRNA_7549: 15917 - Hypothetical Protein, at 541,229 to 541,762 15917 mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541,914 to 542,318 15918 mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542,848 to 546,528 15919

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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541,132 - -1.0
541,339 + 15917 mRNA_7549 0.21 -0.7
541,749 - +0.0
542,784 - +0.6
542,795 - +0.1
542,799 + -0.0
542,930 - +1.0
542,947 + +1.3
542,950 + +1.0
542,958 - +1.6
543,214 + +0.7
543,217 - 15919 mRNA_7551 0.10 -0.2
543,248 - 15919 mRNA_7551 0.11 +0.8

Or see this region's nucleotide sequence