Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7594

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15961 and 15962 are separated by 290 nucleotides15962 and 15963 are separated by 252 nucleotides15963 and 15964 are separated by 56 nucleotides mRNA_7593: 15961 - K15631 ABA3 molybdenum cofactor sulfurtransferase, at 637,612 to 640,700 15961 mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640,991 to 646,168 15962 mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646,421 to 647,106 15963 mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088 15964

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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640,053 - 15961 mRNA_7593 0.79 -1.2
640,080 + 15961 mRNA_7593 0.80 +1.0
640,260 - 15961 mRNA_7593 0.86 +0.9
640,341 - 15961 mRNA_7593 0.88 +0.1
640,341 - 15961 mRNA_7593 0.88 +0.1
640,346 - 15961 mRNA_7593 0.89 -0.9
640,372 + 15961 mRNA_7593 0.89 +0.5
640,643 - -0.9
640,813 - +0.3
640,820 + -0.3
640,828 - -0.0
640,836 - -0.2
640,836 + -0.1
640,958 - +0.0
640,968 + -0.0
640,969 + -0.5
640,972 - +0.1
640,976 - +0.0
640,977 + +0.8
640,980 - -2.0
641,081 - +0.3
641,252 - +0.0
641,279 - +0.0
641,362 - +0.6
641,419 + -0.8
641,524 + 15962 mRNA_7594 0.10 -0.3
641,548 - 15962 mRNA_7594 0.11 +0.3
641,681 - 15962 mRNA_7594 0.13 -2.7
641,707 + 15962 mRNA_7594 0.14 +0.2
641,855 - 15962 mRNA_7594 0.17 +0.2
641,972 - 15962 mRNA_7594 0.19 +0.2
641,982 - 15962 mRNA_7594 0.19 +0.1
642,406 + 15962 mRNA_7594 0.27 +0.2
642,480 + 15962 mRNA_7594 0.29 +0.4
642,784 - 15962 mRNA_7594 0.35 +0.3
642,902 + 15962 mRNA_7594 0.37 +0.6
642,989 - 15962 mRNA_7594 0.39 -0.8
643,033 + 15962 mRNA_7594 0.39 +0.3
643,200 - 15962 mRNA_7594 0.43 +0.1
643,735 + 15962 mRNA_7594 0.53 -0.4
643,819 - 15962 mRNA_7594 0.55 +0.6
644,024 - 15962 mRNA_7594 0.59 +0.2
644,233 - 15962 mRNA_7594 0.63 -0.9
644,236 + 15962 mRNA_7594 0.63 -0.1
644,373 - 15962 mRNA_7594 0.65 -1.0
644,501 + 15962 mRNA_7594 0.68 +0.7
644,507 + 15962 mRNA_7594 0.68 -0.3
644,531 - 15962 mRNA_7594 0.68 -0.0
644,654 - 15962 mRNA_7594 0.71 +0.6
644,831 - 15962 mRNA_7594 0.74 +0.1
645,118 - 15962 mRNA_7594 0.80 +1.0
645,219 - 15962 mRNA_7594 0.82 -0.8
645,220 - 15962 mRNA_7594 0.82 -0.0
645,245 - 15962 mRNA_7594 0.82 -0.2
645,393 - 15962 mRNA_7594 0.85 -1.7
645,400 + 15962 mRNA_7594 0.85 -1.3
645,414 + 15962 mRNA_7594 0.85 +0.0
645,521 + 15962 mRNA_7594 0.87 -0.1
645,675 + -1.4
645,999 + +0.9
646,100 - -0.1
646,142 + -0.6
646,267 - +0.1
646,267 - -0.0
646,273 + -0.9
646,390 + +1.8

Or see this region's nucleotide sequence