Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7597

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15964 and 15965 are separated by 173 nucleotides15965 and 15966 are separated by 237 nucleotides mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088 15964 mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679 15965 mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257 15966

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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647,267 - 15964 mRNA_7596 0.11 +0.7
647,280 + 15964 mRNA_7596 0.13 +0.5
647,281 + 15964 mRNA_7596 0.13 +1.5
647,281 - 15964 mRNA_7596 0.13 +0.2
647,287 + 15964 mRNA_7596 0.13 -0.1
647,441 - 15964 mRNA_7596 0.30 +0.4
647,733 + 15964 mRNA_7596 0.62 +0.8
647,767 + 15964 mRNA_7596 0.65 +0.6
648,019 + +0.0
648,022 - -0.3
648,036 + +0.3
648,036 + +0.2
648,297 + -0.4
648,324 - -0.4
648,460 + 15965 mRNA_7597 0.14 -0.6
648,588 - 15965 mRNA_7597 0.23 +0.3
648,883 - 15965 mRNA_7597 0.44 -0.1
649,134 - 15965 mRNA_7597 0.61 -1.7
649,274 - 15965 mRNA_7597 0.71 +0.6
649,572 - +0.2
649,578 - -0.4
649,579 + -1.8
649,717 + +0.6
649,730 + +0.1
649,873 + +0.2
649,875 - -0.1
650,023 + +0.0
650,187 + 15966 mRNA_7598 0.12 -0.7
650,308 - 15966 mRNA_7598 0.17 +0.3
650,322 - 15966 mRNA_7598 0.17 -0.5
650,341 + 15966 mRNA_7598 0.18 +1.3
650,353 + 15966 mRNA_7598 0.19 -1.4
650,622 + 15966 mRNA_7598 0.30 -0.8

Or see this region's nucleotide sequence