Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7618

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15986 and 15987 are separated by 186 nucleotides mRNA_7618: 15986 - K14549 UTP15 U3 small nucleolar RNA-associated protein 15, at 694,417 to 696,381 15986 mRNA_7619: 15987 - Interpro NADH-ubiquinone oxidoreductase MWFE subunit 0, at 696,568 to 697,325 15987

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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693,419 - -0.3
693,424 + +0.7
693,436 + +0.8
693,437 + +0.1
693,445 + -0.2
693,453 + -0.2
693,457 + -0.2
693,461 - +0.2
693,465 - -0.2
693,465 - -0.6
693,466 - -0.7
693,466 - +0.3
693,467 + -0.3
693,468 - +0.9
693,473 + -0.2
693,478 - -1.0
693,479 + -0.4
693,492 + +0.6
693,499 - +0.2
693,499 - -0.4
693,500 + +0.6
693,532 + +1.2
693,541 + +0.1
693,613 + +0.7
693,655 - -0.2
693,659 + +0.9
693,662 + -1.7
693,663 + +0.1
693,665 - +0.1
693,669 - -1.2
693,674 - +2.4
693,678 + -2.4
693,682 + -0.6
693,693 - -0.1
693,705 + +0.9
693,717 - +0.9
693,736 + +0.6
693,756 - -0.3
693,777 - -1.0
693,781 + +0.6
693,785 + +1.3
693,801 + +0.2
693,833 - +0.8
693,904 + +1.2
693,940 - +0.3
693,949 + -0.3
693,952 + -0.1
693,956 + -0.3
693,957 + -0.2
693,977 + +0.3
694,004 - +0.1
694,103 + -0.3
694,119 - +0.8
694,120 - +0.3
694,240 - -0.4
694,241 + +0.1
694,242 + -0.6
694,254 - -0.7
694,262 + -0.4
694,266 - +0.0
694,268 - -0.2
694,268 + -0.2
694,278 - -0.5
694,278 - +1.0
694,289 - -0.3

Or see this region's nucleotide sequence