Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7624

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15991 and 15992 are separated by 626 nucleotides15992 and 15993 are separated by 177 nucleotides mRNA_7623: 15991 - K19564 CTR, HNM1 choline transport protein, at 704,159 to 706,103 15991 mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706,730 to 707,973 15992 mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708,151 to 709,093 15993

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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705,994 - -2.2
706,018 - -0.4
706,023 + -0.7
706,024 - -0.5
706,308 - -0.8
706,311 - +0.5
706,332 - +0.3
706,456 - -0.5
706,470 + +0.8
706,476 + +0.4
706,479 - +0.3
706,481 - +0.6
706,617 - -0.1
706,631 - +0.6
706,789 + -0.2
706,813 - -0.3
706,966 + 15992 mRNA_7624 0.19 -1.2
707,152 + 15992 mRNA_7624 0.34 -0.6
707,158 + 15992 mRNA_7624 0.34 +0.9
707,250 + 15992 mRNA_7624 0.42 -0.1
707,278 + 15992 mRNA_7624 0.44 -1.9
707,406 + 15992 mRNA_7624 0.54 +0.6
707,724 + 15992 mRNA_7624 0.80 +0.1
707,785 - 15992 mRNA_7624 0.85 -0.1
707,837 + 15992 mRNA_7624 0.89 -0.9
707,848 - 15992 mRNA_7624 0.90 -0.0
707,905 + +0.4
707,980 - -1.8
707,994 - -1.6
707,996 + +0.5
707,997 + -0.4
708,002 - +0.6
708,026 - +0.0
708,057 - +0.9
708,130 - -0.0
708,135 + -0.5
708,136 - -0.2
708,465 + 15993 mRNA_7625 0.33 +0.0
708,581 + 15993 mRNA_7625 0.46 -1.0
708,689 + 15993 mRNA_7625 0.57 +0.1
708,757 - 15993 mRNA_7625 0.64 +1.0
708,849 - 15993 mRNA_7625 0.74 -0.2
708,853 - 15993 mRNA_7625 0.74 +0.3
708,869 - 15993 mRNA_7625 0.76 +0.3
708,883 - 15993 mRNA_7625 0.78 -0.6
708,895 + 15993 mRNA_7625 0.79 -0.7
708,898 + 15993 mRNA_7625 0.79 +0.5

Or see this region's nucleotide sequence