Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7654

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16021 and 16022 are separated by 566 nucleotides16022 and 16023 are separated by 389 nucleotides mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773,095 to 776,030 16021 mRNA_7654: 16022 - K06911 K06911 uncharacterized protein, at 776,597 to 777,755 16022 mRNA_7655: 16023 - K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4, at 778,145 to 779,164 16023

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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775,832 + -0.3
775,898 - +0.9
776,142 - -0.2
776,257 - +0.8
776,276 - -0.1
776,289 + -1.2
776,429 - +0.4
776,432 - -0.4
776,445 + +0.3
776,452 - +1.0
776,452 - -0.9
776,462 - +0.2
776,494 + -0.5
776,602 - -0.2
776,748 + 16022 mRNA_7654 0.13 +0.9
776,770 + 16022 mRNA_7654 0.15 -1.4
777,005 + 16022 mRNA_7654 0.35 +1.2
777,043 + 16022 mRNA_7654 0.38 +0.6
777,063 + 16022 mRNA_7654 0.40 -0.3
777,474 - 16022 mRNA_7654 0.76 +1.3
777,624 - 16022 mRNA_7654 0.89 -0.1
777,803 + -0.2
777,870 + -1.0
777,875 - -1.7
777,915 + -1.3
777,916 - +0.3
778,080 - -0.2
778,665 - 16023 mRNA_7655 0.51 -0.6

Or see this region's nucleotide sequence