Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7678

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16045 and 16046 are separated by 351 nucleotides16046 and 16047 are separated by 151 nucleotides mRNA_7677: 16045 - Hypothetical Protein, at 820,040 to 821,034 16045 mRNA_7678: 16046 - K00657 speG diamine N-acetyltransferase, at 821,386 to 822,078 16046 mRNA_7679: 16047 - K12861 BCAS2 pre-mRNA-splicing factor SPF27, at 822,230 to 823,111 16047

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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820,471 - 16045 mRNA_7677 0.43 -0.5
820,498 + 16045 mRNA_7677 0.46 +0.1
820,616 + 16045 mRNA_7677 0.58 +0.3
820,667 + 16045 mRNA_7677 0.63 +1.2
820,668 - 16045 mRNA_7677 0.63 -0.2
820,776 - 16045 mRNA_7677 0.74 +0.3
820,787 + 16045 mRNA_7677 0.75 +0.1
821,065 - -0.2
821,071 - -0.7
821,133 - -0.6
821,219 - +0.8
821,351 + +2.0
821,724 + 16046 mRNA_7678 0.49 +2.3
821,824 + 16046 mRNA_7678 0.63 -0.0
821,827 + 16046 mRNA_7678 0.64 -0.9
821,974 + 16046 mRNA_7678 0.85 +0.3
822,093 - +0.4
822,869 - 16047 mRNA_7679 0.72 -0.5
823,043 - +0.3

Or see this region's nucleotide sequence