Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7703

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16070 and 16071 are separated by 335 nucleotides16071 and 16072 are separated by 286 nucleotides mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880,758 to 882,745 16070 mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883,081 to 887,724 16071 mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888,011 to 890,440 16072

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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882,144 + 16070 mRNA_7702 0.70 -1.0
882,226 + 16070 mRNA_7702 0.74 -2.9
882,439 + 16070 mRNA_7702 0.85 -0.1
882,700 + -0.2
882,894 + -0.1
882,992 - +0.1
882,997 - +0.1
883,017 - -0.1
885,485 - 16071 mRNA_7703 0.52 +1.5
885,538 + 16071 mRNA_7703 0.53 +1.3
885,761 - 16071 mRNA_7703 0.58 +0.7
885,937 - 16071 mRNA_7703 0.61 -0.6
886,059 + 16071 mRNA_7703 0.64 -0.2
886,158 - 16071 mRNA_7703 0.66 -0.8
886,303 - 16071 mRNA_7703 0.69 -2.2
886,318 - 16071 mRNA_7703 0.70 -1.0
886,319 - 16071 mRNA_7703 0.70 -0.4
886,457 - 16071 mRNA_7703 0.73 -0.0
886,463 - 16071 mRNA_7703 0.73 -1.0
886,949 - 16071 mRNA_7703 0.83 +0.2
887,354 - -1.4
887,683 + +0.1
887,696 + +0.9
887,947 - -0.3
887,950 - -0.7
887,957 - +0.7
887,959 + +0.0
887,959 + -0.2

Or see this region's nucleotide sequence