Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7715

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16082 and 16083 are separated by 700 nucleotides16083 and 16084 are separated by 177 nucleotides mRNA_7714: 16082 - Hypothetical Protein, at 910,983 to 911,507 16082 mRNA_7715: 16083 - K05906 PCYOX1, FCLY prenylcysteine oxidase / farnesylcysteine lyase, at 912,208 to 914,199 16083 mRNA_7716: 16084 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,377 to 916,926 16084

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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911,224 + 16082 mRNA_7714 0.46 -1.2
911,356 + 16082 mRNA_7714 0.71 -1.1
911,405 + 16082 mRNA_7714 0.80 -0.3
911,405 + 16082 mRNA_7714 0.80 +0.8
911,683 - -0.0
911,822 + -0.0
912,027 + +0.2
912,030 + -0.3
912,149 - +0.3
912,215 - +0.6
912,249 + -0.3
912,265 - +2.9
912,369 + -0.8
912,378 + +0.3
912,528 - 16083 mRNA_7715 0.16 +0.3
913,183 - 16083 mRNA_7715 0.49 -1.4
913,428 + 16083 mRNA_7715 0.61 -0.1
913,558 - 16083 mRNA_7715 0.68 +0.3
913,778 - 16083 mRNA_7715 0.79 +0.3
913,848 + 16083 mRNA_7715 0.82 -0.7
913,859 - 16083 mRNA_7715 0.83 -1.3
913,997 - 16083 mRNA_7715 0.90 +0.2
914,316 - +0.8
914,340 - +0.7
914,461 + -0.4
914,555 + -0.9
914,617 - +0.6
914,621 + +0.3
914,806 + 16084 mRNA_7716 0.17 -1.1
915,005 + 16084 mRNA_7716 0.25 +1.4
915,067 - 16084 mRNA_7716 0.27 -1.7
915,177 - 16084 mRNA_7716 0.31 -1.1

Or see this region's nucleotide sequence