Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7783

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16150 and 16151 are separated by 853 nucleotides16151 and 16152 are separated by 135 nucleotides mRNA_7782: 16150 - Hypothetical Protein, at 1,057,267 to 1,057,848 16150 mRNA_7783: 16151 - HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506, at 1,058,702 to 1,060,371 16151 mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,060,507 to 1,063,006 16152

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,057,780 - 16150 mRNA_7782 0.88 -1.4
1,057,783 - 16150 mRNA_7782 0.89 +0.0
1,057,942 + -0.2
1,057,957 - -0.0
1,058,075 - +0.2
1,058,283 - +0.0
1,058,378 + +0.3
1,059,787 - 16151 mRNA_7783 0.65 -1.5
1,060,126 + 16151 mRNA_7783 0.85 -0.5
1,060,136 - 16151 mRNA_7783 0.86 -0.3
1,060,255 - +0.1
1,060,265 + +0.8
1,060,271 + -0.9
1,060,271 - -1.7
1,060,274 + +0.2
1,060,285 + +0.1
1,060,400 - +0.7
1,060,428 - -1.7
1,060,439 + -0.5
1,060,705 + -1.9
1,060,730 + -0.7
1,061,087 + 16152 mRNA_7784 0.23 +0.4
1,061,160 + 16152 mRNA_7784 0.26 +0.0

Or see this region's nucleotide sequence