Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7804

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16171 and 16172 are separated by 281 nucleotides16172 and 16173 are separated by 203 nucleotides mRNA_7803: 16171 - K11855 USP36_42 ubiquitin carboxyl-terminal hydrolase 36/42, at 1,108,801 to 1,111,238 16171 mRNA_7804: 16172 - KOG1204 Predicted dehydrogenase, at 1,111,520 to 1,112,833 16172 mRNA_7805: 16173 - K12389 BTS, CLN3 battenin, at 1,113,037 to 1,115,028 16173

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,111,009 - -1.4
1,111,319 - +0.3
1,111,456 - +1.6
1,111,456 - +0.3
1,111,465 - +0.7
1,111,474 - -0.4
1,111,487 - -0.3
1,111,625 - -1.0
1,111,629 - -0.7
1,111,633 + -0.1
1,111,640 + -0.8
1,111,766 - 16172 mRNA_7804 0.19 -0.8
1,111,783 + 16172 mRNA_7804 0.20 +0.6
1,111,898 - 16172 mRNA_7804 0.29 +1.7
1,111,904 - 16172 mRNA_7804 0.29 -1.5
1,111,914 + 16172 mRNA_7804 0.30 -0.9
1,112,049 - 16172 mRNA_7804 0.40 -1.7
1,112,354 - 16172 mRNA_7804 0.63 -1.2
1,112,463 + 16172 mRNA_7804 0.72 -0.4
1,112,466 + 16172 mRNA_7804 0.72 -0.2
1,112,914 - -0.9
1,112,933 + +0.0
1,112,936 - -0.2
1,112,942 - -0.3
1,112,961 + -0.1
1,113,548 + 16173 mRNA_7805 0.26 +0.2
1,113,651 - 16173 mRNA_7805 0.31 +0.8
1,113,676 + 16173 mRNA_7805 0.32 -0.2
1,113,828 + 16173 mRNA_7805 0.40 +0.6

Or see this region's nucleotide sequence