Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7810

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16177 and 16178 are separated by 938 nucleotides16178 and 16179 are separated by 421 nucleotides mRNA_7809: 16177 - Hypothetical Protein, at 1,121,934 to 1,122,810 16177 mRNA_7810: 16178 - K02358 tuf, TUFM elongation factor Tu, at 1,123,749 to 1,125,478 16178 mRNA_7811: 16179 - Hypothetical Protein, at 1,125,900 to 1,126,824 16179

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,122,751 - +0.8
1,122,759 - +0.2
1,122,790 + +1.1
1,123,022 + -0.3
1,123,062 - -0.4
1,123,082 + +0.5
1,123,185 - -0.5
1,123,188 - -2.2
1,123,204 + -0.3
1,123,342 + -0.1
1,123,346 - +0.2
1,123,348 + -0.9
1,123,348 + -0.9
1,123,362 + -0.8
1,123,363 + -0.1
1,123,373 + +0.4
1,123,374 - -0.7
1,123,383 + -0.8
1,124,565 - 16178 mRNA_7810 0.47 +0.0
1,125,512 - -0.6
1,125,570 + +1.7
1,125,573 + +1.2
1,125,687 + -0.1
1,125,713 - +0.7
1,125,851 + -0.1
1,125,861 - +1.1
1,125,869 - +0.5
1,126,041 - 16179 mRNA_7811 0.15 -0.8
1,126,150 + 16179 mRNA_7811 0.27 +0.9
1,126,453 - 16179 mRNA_7811 0.60 -0.0

Or see this region's nucleotide sequence