Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7830

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16197 and 16198 are separated by 958 nucleotides16198 and 16199 are separated by 372 nucleotides mRNA_7829: 16197 - K06126 COQ6 ubiquinone biosynthesis monooxygenase Coq6, at 1,161,374 to 1,163,565 16197 mRNA_7830: 16198 - Hypothetical Protein, at 1,164,524 to 1,165,220 16198 mRNA_7831: 16199 - Hypothetical Protein, at 1,165,593 to 1,166,209 16199

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,163,551 + +1.0
1,163,658 - +1.1
1,164,139 + -0.3
1,164,392 + +0.1
1,164,726 - 16198 mRNA_7830 0.29 -0.1
1,164,791 - 16198 mRNA_7830 0.38 -0.3
1,164,873 - 16198 mRNA_7830 0.50 -0.9
1,164,896 - 16198 mRNA_7830 0.53 -2.1
1,164,912 + 16198 mRNA_7830 0.56 +0.2
1,165,174 + -0.2
1,165,192 - -0.4
1,165,303 + -1.5
1,165,671 - 16199 mRNA_7831 0.13 -1.9
1,165,928 - 16199 mRNA_7831 0.54 +0.2
1,166,084 - 16199 mRNA_7831 0.80 +0.6

Or see this region's nucleotide sequence