Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7840

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16207 and 16208 are separated by 526 nucleotides16208 and 16209 are separated by 571 nucleotides mRNA_7839: 16207 - Hypothetical Protein, at 1,180,939 to 1,182,264 16207 mRNA_7840: 16208 - K00620 argJ glutamate N-acetyltransferase / amino-acid N-acetyltransferase, at 1,182,791 to 1,184,398 16208 mRNA_7841: 16209 - K04728 ATM, TEL1 ataxia telangiectasia mutated family protein, at 1,184,970 to 1,194,668 16209

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,182,278 - -1.1
1,182,286 + +0.8
1,182,400 + +0.4
1,182,646 + -0.2
1,182,676 - +0.8
1,182,823 - -0.9
1,183,103 + 16208 mRNA_7840 0.19 -2.5
1,183,126 - 16208 mRNA_7840 0.21 -1.1
1,183,234 - 16208 mRNA_7840 0.28 +0.4
1,183,434 - 16208 mRNA_7840 0.40 -0.7
1,183,562 + 16208 mRNA_7840 0.48 -0.6
1,184,312 + -0.6
1,184,337 - -2.9
1,184,446 + -0.3
1,184,457 + -0.3
1,184,483 + -0.3
1,184,516 - -0.6
1,184,629 + -1.0
1,184,721 + -0.5
1,184,756 - -0.4
1,184,762 + -0.9
1,184,903 - +0.7
1,184,937 + -1.8
1,185,049 - -1.0
1,185,058 + -3.6
1,185,064 - +0.4

Or see this region's nucleotide sequence