Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7848

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16215 and 16216 are separated by 606 nucleotides mRNA_7847: 16215 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,205,985 to 1,207,828 16215 mRNA_7848: 16216 - BLAST LYR MOTIF-CONTAINING PROTEIN 7 [Ceraceosorus bombacis], at 1,208,435 to 1,209,073 16216

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,207,526 + 16215 mRNA_7847 0.84 -0.4
1,208,146 - -0.4
1,208,175 + -0.2
1,208,587 - 16216 mRNA_7848 0.24 +2.8
1,209,024 + +0.7
1,209,418 - +0.0
1,209,419 + +0.7
1,209,425 - -0.4
1,209,455 + +0.2
1,209,499 - +0.1
1,209,539 + -3.3
1,209,575 + -0.8
1,209,596 - -0.7
1,209,618 + -1.9
1,209,723 - +1.1
1,209,853 + +0.1
1,209,858 + -0.4
1,209,864 - -0.7
1,209,870 + -0.3
1,209,885 - -0.7
1,210,008 - -1.0
1,210,020 + -0.6
1,210,038 + +0.6

Or see this region's nucleotide sequence