Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7925

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16292 and 16293 are separated by 906 nucleotides16293 and 16294 are separated by 594 nucleotides mRNA_7924: 16292 - Hypothetical Protein, at 34,396 to 34,788 16292 mRNA_7925: 16293 - Hypothetical Protein, at 35,695 to 36,297 16293 mRNA_7926: 16294 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 36,892 to 37,805 16294

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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34,785 + +1.0
34,795 + -0.4
34,870 + +0.3
34,907 + +0.8
34,918 - +0.1
34,926 - -1.0
35,013 - -0.9
35,089 + -0.1
35,361 + +1.6
35,596 - +0.2
35,861 + 16293 mRNA_7925 0.28 +0.4
35,918 + 16293 mRNA_7925 0.37 -1.5
35,934 + 16293 mRNA_7925 0.40 +0.3
35,947 - 16293 mRNA_7925 0.42 +0.6
36,000 + 16293 mRNA_7925 0.51 +2.6
36,040 + 16293 mRNA_7925 0.57 +1.9
36,053 + 16293 mRNA_7925 0.59 +0.3
36,200 - 16293 mRNA_7925 0.84 +0.1
36,200 + 16293 mRNA_7925 0.84 +0.1
36,533 + -1.3
36,558 + -0.6
36,565 + +0.6
36,802 + +1.1
36,802 + +0.3
36,833 - +0.6
36,845 - +0.4
36,930 - -0.3
36,968 + -0.3
36,979 + +0.8
37,105 + 16294 mRNA_7926 0.23 +0.8
37,155 + 16294 mRNA_7926 0.29 -1.1
37,183 + 16294 mRNA_7926 0.32 +0.6
37,238 - 16294 mRNA_7926 0.38 -0.4
37,250 - 16294 mRNA_7926 0.39 +0.0
37,269 + 16294 mRNA_7926 0.41 +0.7

Or see this region's nucleotide sequence