Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7967

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16334 and 16335 are separated by 799 nucleotides16335 and 16336 are separated by 27 nucleotides mRNA_7966: 16334 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 110,681 to 111,565 16334 mRNA_7967: 16335 - Hypothetical Protein, at 112,365 to 112,943 16335 mRNA_7968: 16336 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 112,971 to 114,201 16336

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
111,473 + 16334 mRNA_7966 0.89 -0.1
111,605 + -0.3
111,662 + -0.3
111,667 - +0.1
111,682 + -0.3
111,682 - -1.5
111,728 + -0.3
111,753 + -0.3
111,755 + -1.1
111,761 - +0.6
111,764 + +0.2
111,767 - +0.3
111,772 - +0.8
111,780 + +0.4
111,793 - -0.2
111,935 + -1.5
112,224 + +0.3
112,225 + -0.6
112,239 - -0.1
112,275 + +0.1
112,360 - -0.5
112,520 + 16335 mRNA_7967 0.27 +0.3
112,520 - 16335 mRNA_7967 0.27 +0.0
112,539 + 16335 mRNA_7967 0.30 -0.4
112,539 + 16335 mRNA_7967 0.30 -0.5
112,662 + 16335 mRNA_7967 0.51 -1.4
112,677 - 16335 mRNA_7967 0.54 -0.4
112,678 + 16335 mRNA_7967 0.54 -1.4
112,816 - 16335 mRNA_7967 0.78 -1.2
112,820 - 16335 mRNA_7967 0.79 +0.5
112,999 + +0.1
113,203 + 16336 mRNA_7968 0.19 +0.8
113,231 + 16336 mRNA_7968 0.21 -0.4
113,255 - 16336 mRNA_7968 0.23 +0.4
113,255 - 16336 mRNA_7968 0.23 +1.3
113,257 - 16336 mRNA_7968 0.23 +0.2
113,286 + 16336 mRNA_7968 0.26 -0.0
113,286 + 16336 mRNA_7968 0.26 -0.4
113,286 + 16336 mRNA_7968 0.26 -0.2
113,429 + 16336 mRNA_7968 0.37 -1.0
113,442 - 16336 mRNA_7968 0.38 -0.5
113,502 - 16336 mRNA_7968 0.43 -0.6
113,508 - 16336 mRNA_7968 0.44 -0.9
113,532 + 16336 mRNA_7968 0.46 -1.0
113,564 - 16336 mRNA_7968 0.48 -1.4
113,567 + 16336 mRNA_7968 0.48 -1.1
113,568 - 16336 mRNA_7968 0.48 +0.7
113,576 + 16336 mRNA_7968 0.49 -0.7
113,590 - 16336 mRNA_7968 0.50 -1.0
113,649 + 16336 mRNA_7968 0.55 -0.7
113,690 - 16336 mRNA_7968 0.58 +0.0
113,792 - 16336 mRNA_7968 0.67 -0.8
113,860 - 16336 mRNA_7968 0.72 -0.7
113,919 + 16336 mRNA_7968 0.77 +0.2

Or see this region's nucleotide sequence