Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8042

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16409 and 16410 are separated by 236 nucleotides16410 and 16411 are separated by 211 nucleotides mRNA_8041: 16409 - K13350 PXMP4, PMP24 peroxisomal membrane protein 4, at 287,723 to 288,731 16409 mRNA_8042: 16410 - K17408 DAP3, MRPS29 small subunit ribosomal protein S29, at 288,968 to 290,792 16410 mRNA_8043: 16411 - K15283 SLC35E1 solute carrier family 35, member E1, at 291,004 to 293,289 16411

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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288,224 + 16409 mRNA_8041 0.50 -0.3
288,509 - 16409 mRNA_8041 0.78 -0.2
288,780 + -0.4
288,923 - -0.0
288,931 + -0.4
288,932 + -0.9
289,219 + 16410 mRNA_8042 0.14 -1.3
291,310 - 16411 mRNA_8043 0.13 -1.0

Or see this region's nucleotide sequence