Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8056

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16423 and 16424 are separated by 276 nucleotides16424 and 16425 are separated by 979 nucleotides mRNA_8055: 16423 - K06173 truA, PUS1 tRNA pseudouridine38-40 synthase, at 312,890 to 314,981 16423 mRNA_8056: 16424 - Hypothetical Protein, at 315,258 to 318,661 16424 mRNA_8057: 16425 - K08866 TTK, MPS1 serine/threonine-protein kinase TTK/MPS1, at 319,641 to 320,716 16425

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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315,081 - -1.5
315,083 - +0.4
315,383 - +0.2
318,904 - +0.3
319,652 + -0.0

Or see this region's nucleotide sequence